Package: fastqcr 0.1.3.999

fastqcr: Quality Control of Sequencing Data

'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.

Authors:Alboukadel Kassambara [aut, cre]

fastqcr_0.1.3.999.tar.gz
fastqcr_0.1.3.999.zip(r-4.7)fastqcr_0.1.3.999.zip(r-4.6)fastqcr_0.1.3.999.zip(r-4.5)
fastqcr_0.1.3.999.tgz(r-4.6-any)fastqcr_0.1.3.999.tgz(r-4.5-any)
fastqcr_0.1.3.999.tar.gz(r-4.7-any)fastqcr_0.1.3.999.tar.gz(r-4.6-any)
fastqcr_0.1.3.999.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
fastqcr/json (API)
NEWS

# Install 'fastqcr' in R:
install.packages('fastqcr', repos = c('https://kassambara.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kassambara/fastqcr/issues

On CRAN:

Conda:

6.38 score 77 stars 207 scripts 574 downloads 13 exports 69 dependencies

Last updated from:e7b2fe7a61. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK148
source / vignettesOK247
linux-release-x86_64OK145
macos-release-arm64OK205
macos-oldrel-arm64OK150
windows-develOK225
windows-releaseOK92
windows-oldrelOK95
wasm-releaseOK128

Exports:fastqcfastqc_installqc_aggregateqc_failsqc_plotqc_plot_collectionqc_problemsqc_readqc_read_collectionqc_reportqc_statsqc_unzipqc_warns

Dependencies:askpassbase64encbitbit64bslibcachemclicliprcpp11crayoncurldigestdplyrevaluatefarverfastmapfontawesomefsgenericsggplot2gluegridExtragtablehighrhmshtmltoolshttrisobandjquerylibjsonliteknitrlabelinglifecyclemagrittrmemoisemimeopensslpillarpkgconfigprettyunitsprogresspurrrR6rappdirsRColorBrewerreadrrlangrmarkdownrvestS7sassscalesselectrstringistringrsystibbletidyrtidyselecttinytextzdbutf8vctrsviridisLitevroomwithrxfunxml2yaml