Package: fastqcr 0.1.3.999

fastqcr: Quality Control of Sequencing Data

'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.

Authors:Alboukadel Kassambara [aut, cre]

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fastqcr.pdf |fastqcr.html✨
fastqcr/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/kassambara/fastqcr/issues

On CRAN:

13 exports 67 stars 3.55 score 76 dependencies 173 scripts 639 downloads

Last updated 2 years agofrom:e7b2fe7a61. Checks:OK: 7. Indexed: yes.

Exports:fastqcfastqc_installqc_aggregateqc_failsqc_plotqc_plot_collectionqc_problemsqc_readqc_read_collectionqc_reportqc_statsqc_unzipqc_warns

Dependencies:askpassbase64encbitbit64bslibcachemclicliprcolorspacecpp11crayoncurldigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegridExtragtablehighrhmshtmltoolshttrisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigprettyunitsprogresspurrrR6rappdirsRColorBrewerreadrrlangrmarkdownrvestsassscalesselectrstringistringrsystibbletidyrtidyselecttinytextzdbutf8vctrsviridisLitevroomwithrxfunxml2yaml