Package: fastqcr
Type: Package
Title: Quality Control of Sequencing Data
Version: 0.1.3.999
Date: 2023-02-18
Authors@R: c(
    person("Alboukadel", "Kassambara", role = c("aut", "cre"), email = "alboukadel.kassambara@gmail.com")
    )
Description: 'FASTQC' is the most widely used tool for evaluating the
        quality of high throughput sequencing data. It produces, for
        each sample, an html report and a compressed file containing
        the raw data. If you have hundreds of samples, you are not
        going to open up each 'HTML' page. You need some way of looking
        at these data in aggregate. 'fastqcr' Provides helper functions
        to easily parse, aggregate and analyze 'FastQC' reports for
        large numbers of samples. It provides a convenient solution for
        building a 'Multi-QC' report, as well as, a 'one-sample' report
        with result interpretations.
License: GPL-2
Encoding: UTF-8
Depends: R (>= 3.1.2)
Imports: dplyr, grid, gridExtra, ggplot2, magrittr, readr (>= 1.3.0),
        rmarkdown (>= 1.4), rvest, tibble, tidyr, scales, stats, utils,
        xml2, rlang
Suggests: knitr
URL: https://rpkgs.datanovia.com/fastqcr/index.html
BugReports: https://github.com/kassambara/fastqcr/issues
RoxygenNote: 7.2.3
Collate: 'utilities.R' 'fastqc.R' 'fastqc_install.R' 'qc_aggregate.R'
        'qc_plot.R' 'qc_plot_collection.R' 'qc_problems.R' 'qc_read.R'
        'qc_read_collection.R' 'qc_report.R' 'qc_unzip.R'
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libxml2-dev
        libssl-dev libx11-dev
Repository: https://kassambara.r-universe.dev
Date/Publication: 2023-02-18 14:25:27 UTC
RemoteUrl: https://github.com/kassambara/fastqcr
RemoteRef: HEAD
RemoteSha: e7b2fe7a616e6c10592240db0aff3551fb021786
NeedsCompilation: no
Packaged: 2026-06-10 09:41:21 UTC; root
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>