This is a gallery of
finished figures — each with the code that produces it — for
the kinds of correlograms that show up in papers. For the
argument-by-argument tour of every option, see
vignette("ggcorrplot").
Two facts make ggcorrplot well suited to publication work: it takes a
correlation matrix you already have (so it never gets between you and
your statistics), and it returns a plain ggplot object,
so any figure here can be restyled, titled, and combined with
+.
library(ggcorrplot)
library(ggplot2)
data(mtcars)
corr <- round(cor(mtcars), 1)
p.mat <- cor_pmat(mtcars)The workhorse figure: reorder the variables by hierarchical clustering so correlated variables sit together and the block structure is visible, and draw thin white separators between cells.
For a symmetric matrix the two triangles are redundant, so a paper usually shows one, often with the coefficients printed in the cells — a figure that replaces a correlation table.
Supply the p-value matrix from cor_pmat() and choose how
to convey significance. insig = "blank" drops the
non-significant cells; insig = "stars" instead marks the
significant ones with
*/**/*** — a standalone
significance map.
# non-significant cells left blank
ggcorrplot(corr, hc.order = TRUE, type = "lower", p.mat = p.mat, insig = "blank")
# significant cells starred
ggcorrplot(corr, p.mat = p.mat, insig = "stars")The default, insig = "pch", crosses out the
non-significant cells with an X instead.
method = "circle" encodes the correlation with the
circle’s area, so strong correlations pop out — the familiar corrplot
look, drawn in ggplot2.
scale.square = TRUE sizes the squares by the absolute
correlation, so magnitude is encoded by both area and color at once —
the classic corrplot square look. Near-zero cells shrink to small
squares while the strong correlations dominate, which reads well for
large matrices and for colorblind viewers.
cell.grid = TRUE draws a light rectangle around every
cell and drops the gridlines that otherwise run through the glyph
centers, so each sized glyph sits inside its own box. Combined with
scale.square = TRUE (or method = "circle")
this is the boxed-cell corrplot signature, drawn in ggplot2. It has no
effect on a plain full-tile square heatmap, whose cells already have a
border.
# size-scaled squares in boxed cells
ggcorrplot(corr, scale.square = TRUE, cell.grid = TRUE, hc.order = TRUE, outline.color = "white")
# circles in boxed cells
ggcorrplot(corr, method = "circle", cell.grid = TRUE, hc.order = TRUE)preset = "publication" is a one-token beautiful default
(white separators + the colorblind-safe RdBu palette). For a specific
journal look, set colors and ggtheme
yourself.
# one-token publication preset
ggcorrplot(corr, hc.order = TRUE, preset = "publication")
# a custom diverging palette on a minimal theme
ggcorrplot(corr,
hc.order = TRUE, type = "lower", outline.color = "white",
ggtheme = theme_minimal, colors = c("#6D9EC1", "white", "#E46726")
)A correlogram of solid colored squares with no cell
border — the look used in many module–trait and omics papers.
method = "square" is a full-tile heatmap;
outline.color = NA removes the border. Reverse the default
gradient to c("red", "white", "blue") for red-negative /
blue-positive, and put the variable names on top with a one-line
scale.
ggcorrplot(corr,
outline.color = NA,
colors = c("red", "white", "blue"),
legend.title = "Correlation"
) +
scale_x_discrete(position = "top")Correlations are not always a square symmetric matrix. To relate one
set of variables to another — say engine/size variables against
performance variables — pass a rectangular correlation
matrix. Clustering and the triangle options need a square matrix, so use
hc.order = FALSE.
rect <- round(cor(
mtcars[, c("mpg", "hp", "wt", "qsec")],
mtcars[, c("disp", "drat", "vs", "am", "gear")]
), 1)
ggcorrplot(rect, hc.order = FALSE, lab = TRUE, outline.color = "white")Because ggcorrplot() returns a ggplot object, anything
ggplot2 can do is available. Start from any correlogram and add a title,
a clearer legend label, and theme tweaks; then save at print
resolution.
The legend label is a ggcorrplot argument
(legend.title); the title, subtitle and theme come from
ggplot2.
p <- ggcorrplot(corr,
hc.order = TRUE, type = "lower", outline.color = "white",
legend.title = "Pearson r"
) +
labs(
title = "Correlations among car-design variables",
subtitle = "mtcars, Pearson correlation"
) +
theme(plot.title = element_text(face = "bold"))
psessionInfo()
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